1.0 2016-09-30 22:19:36 UTC 2020-05-11 20:07:40 UTC BMDB0000098 BMDB00098 D-Xylose D-D-d-xylose, also known as d-xylose or d-xylose, belongs to the class of organic compounds known as pentoses. These are monosaccharides in which the carbohydrate moiety contains five carbon atoms. D-D-d-xylose exists as a solid, possibly soluble (in water), and an extremely weak basic (essentially neutral) compound (based on its pKa) molecule. D-D-d-xylose exists in all living species, ranging from bacteria to humans. In cattle, D-d-xylose is involved in the metabolic pathway called the nucleotide sugars metabolism pathway. D-D-d-xylose is a potentially toxic compound. (3R,4S,5R)-Tetrahydro-2H-pyran-2,3,4,5-tetrol D-(+)-Xylose D-Xylopentose Wood sugar Xylo-pfan D-Xylo-pentose Xylomed Xylose Xyloside Xylopyranose D Xylose D-Xylopyranose Aldehydo-D-xylose D-Xylose C5H10O5 150.1299 150.05282343 (3R,4S,5R)-oxane-2,3,4,5-tetrol d-xylose 58-86-6 O[C@@H]1COC(O)[C@H](O)[C@H]1O InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3+,4-,5?/m1/s1 SRBFZHDQGSBBOR-IOVATXLUSA-N belongs to the class of organic compounds known as pentoses. These are monosaccharides in which the carbohydrate moiety contains five carbon atoms. Organic compounds Organic oxygen compounds Organooxygen compounds Carbohydrates and carbohydrate conjugates Pentoses Hemiacetals Hydrocarbon derivatives Oxacyclic compounds Oxanes Polyols Secondary alcohols Alcohol Aliphatic heteromonocyclic compound Hemiacetal Hydrocarbon derivative Organoheterocyclic compound Oxacycle Oxane Pentose monosaccharide Polyol Secondary alcohol Aliphatic heteromonocyclic compounds Aldoses D-xylose Solid melting_point 90.5 °C water_solubility 555.0 mg/mL logp -2.57 ALOGPS logs 0.91 ALOGPS logp -2.3 ChemAxon pka_strongest_acidic 11.31 ChemAxon pka_strongest_basic -3.5 ChemAxon iupac (3R,4S,5R)-oxane-2,3,4,5-tetrol ChemAxon average_mass 150.1299 ChemAxon mono_mass 150.05282343 ChemAxon smiles O[C@@H]1COC(O)[C@H](O)[C@H]1O ChemAxon formula C5H10O5 ChemAxon inchi InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3+,4-,5?/m1/s1 ChemAxon inchikey SRBFZHDQGSBBOR-IOVATXLUSA-N ChemAxon polar_surface_area 90.15 ChemAxon refractivity 29.96 ChemAxon polarizability 13.43 ChemAxon rotatable_bond_count 0 ChemAxon acceptor_count 5 ChemAxon donor_count 4 ChemAxon physiological_charge 0 ChemAxon formal_charge 0 ChemAxon number_of_rings 1 ChemAxon bioavailability 1 ChemAxon rule_of_five Yes ChemAxon ghose_filter Yes ChemAxon veber_rule Yes ChemAxon mddr_like_rule Yes ChemAxon Specdb::NmrTwoD 956 Specdb::NmrTwoD 1141 Specdb::MsMs 153 Specdb::MsMs 154 Specdb::MsMs 155 Specdb::MsMs 321589 Specdb::MsMs 321590 Specdb::MsMs 321591 Specdb::MsMs 369244 Specdb::MsMs 369245 Specdb::MsMs 369246 Specdb::MsMs 2227272 Specdb::MsMs 2227432 Specdb::MsMs 2229628 Specdb::MsMs 2229866 Specdb::MsMs 2234459 Specdb::MsMs 2234480 Specdb::MsMs 2677755 Specdb::MsMs 2677756 Specdb::MsMs 2677757 Specdb::MsMs 3030968 Specdb::MsMs 3030969 Specdb::MsMs 3030970 Specdb::CMs 25082 Specdb::CMs 37293 Specdb::CMs 102604 Specdb::CMs 102605 Specdb::CMs 102606 Specdb::CMs 102607 Specdb::CMs 158325 Specdb::CMs 1049954 Specdb::CMs 1049955 Specdb::CMs 1049957 Specdb::CMs 1049959 Specdb::CMs 1049961 Specdb::CMs 1049963 Specdb::CMs 1049964 Specdb::CMs 1049966 Specdb::CMs 1049968 Specdb::CMs 1049970 Specdb::CMs 1049972 Specdb::CMs 1049974 Specdb::CMs 1049976 Specdb::CMs 1049977 Specdb::CMs 1049979 Specdb::CMs 1049981 Specdb::CMs 1049983 Specdb::CMs 1049985 Specdb::NmrOneD 1083 Specdb::NmrOneD 1145 Specdb::NmrOneD 142170 Specdb::NmrOneD 142171 Specdb::NmrOneD 142172 Specdb::NmrOneD 142173 Specdb::NmrOneD 142174 Specdb::NmrOneD 142175 Specdb::NmrOneD 142176 Specdb::NmrOneD 142177 Specdb::NmrOneD 142178 Specdb::NmrOneD 142179 Specdb::NmrOneD 142180 Specdb::NmrOneD 142181 Specdb::NmrOneD 142182 Specdb::NmrOneD 142183 Specdb::NmrOneD 142184 Specdb::NmrOneD 142185 Specdb::NmrOneD 142186 Specdb::NmrOneD 142187 Specdb::NmrOneD 142188 Specdb::NmrOneD 142189 Erythrocyte Wishart DS, Feunang YD, Marcu A, Guo AC, Liang K, Vazquez-Fresno R, Sajed T, Johnson D, Li C, Karu N, Sayeeda Z, Lo E, Assempour N, Berjanskii M, Singhal S, Arndt D, Liang Y, Badran H, Grant J, Serra-Cayuela A, Liu Y, Mandal R, Neveu V, Pon A, Knox C, Wilson M, Manach C, Scalbert A: HMDB 4.0: the human metabolome database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D608-D617. doi: 10.1093/nar/gkx1089. 29140435 Intestine Wishart DS, Feunang YD, Marcu A, Guo AC, Liang K, Vazquez-Fresno R, Sajed T, Johnson D, Li C, Karu N, Sayeeda Z, Lo E, Assempour N, Berjanskii M, Singhal S, Arndt D, Liang Y, Badran H, Grant J, Serra-Cayuela A, Liu Y, Mandal R, Neveu V, Pon A, Knox C, Wilson M, Manach C, Scalbert A: HMDB 4.0: the human metabolome database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D608-D617. doi: 10.1093/nar/gkx1089. 29140435 Liver 8 multiparous Chinese Holstein dairy cows fed in the Hangzhou Hangjiang Dairy Farm based on the milk production under corn stover based diets. Detection used gas chromatography time-of-flight/mass spectrometry (GC-TOF/MS) platform. Sun HZ, Zhou M, Wang O, Chen Y, Liu JX, Guan LL: Multi-omics reveals functional genomic and metabolic mechanisms of milk production and quality in dairy cows. Bioinformatics. 2020 Apr 15;36(8):2530-2537. doi: 10.1093/bioinformatics/btz951. 31873721 Liver 8 multiparous Chinese Holstein dairy cows fed in the Hangzhou Hangjiang Dairy Farm based on the milk production under alfalfa hay based diets. Detection used gas chromatography time-of-flight/mass spectrometry (GC-TOF/MS) platform. Sun HZ, Zhou M, Wang O, Chen Y, Liu JX, Guan LL: Multi-omics reveals functional genomic and metabolic mechanisms of milk production and quality in dairy cows. Bioinformatics. 2020 Apr 15;36(8):2530-2537. doi: 10.1093/bioinformatics/btz951. 31873721 Mammary Gland 8 multiparous Chinese Holstein dairy cows fed in the Hangzhou Hangjiang Dairy Farm based on the milk production under corn stover based diets. Detection used gas chromatography time-of-flight/mass spectrometry (GC-TOF/MS) platform. Sun HZ, Zhou M, Wang O, Chen Y, Liu JX, Guan LL: Multi-omics reveals functional genomic and metabolic mechanisms of milk production and quality in dairy cows. Bioinformatics. 2020 Apr 15;36(8):2530-2537. doi: 10.1093/bioinformatics/btz951. 31873721 Mammary Gland 8 multiparous Chinese Holstein dairy cows fed in the Hangzhou Hangjiang Dairy Farm based on the milk production under alfalfa hay based diets. Detection used gas chromatography time-of-flight/mass spectrometry (GC-TOF/MS) platform. Sun HZ, Zhou M, Wang O, Chen Y, Liu JX, Guan LL: Multi-omics reveals functional genomic and metabolic mechanisms of milk production and quality in dairy cows. Bioinformatics. 2020 Apr 15;36(8):2530-2537. doi: 10.1093/bioinformatics/btz951. 31873721 C00181 119104 FDB005944 53455 135191 C00007290 34162 Xylose 314 Lavarack, B. P.; Griffin, G.; Rodman, D. Optimizing the autohydrolysis of bagasse to extract D-xylose. Proceedings of the Conference of the Australian Society of Sugar Cane Technologists (1999), 21st 394-400. BMDBP00383 Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase Q148L6 DHDH Enzyme BMDBP01874 Sodium/myo-inositol cotransporter 2 Q3ZC26 SLC5A11 Enzyme