Record Information
Version1.0
Creation Date2016-09-30 23:03:24 UTC
Update Date2020-04-22 15:11:55 UTC
BMDB IDBMDB0003263
Secondary Accession Numbers
  • BMDB03263
Metabolite Identification
Common NamePelargonidin
Description3,5,7-trihydroxy-2-(4-hydroxyphenyl)-1λ⁴-chromen-1-ylium, also known as 3,4',5,7-tetrahydroxyflavylium chloride or pelargonidol chloride, belongs to the class of organic compounds known as 7-hydroxyflavonoids. These are flavonoids that bear one hydroxyl group at the C-7 position of the flavonoid skeleton. 3,5,7-trihydroxy-2-(4-hydroxyphenyl)-1λ⁴-chromen-1-ylium is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Thumb
Synonyms
ValueSource
3,4',5,7-Tetrahydroxyflavylium chlorideChEBI
3,5,7-Trihydroxy-2-(4-hydroxyphenyl)-1-benzopyrylium chlorideChEBI
3,5,7-Trihydroxy-2-(4-hydroxyphenyl)benzopyrylium chlorideChEBI
PelargonidinChEBI
Pelargonidol chlorideChEBI
3,4',5,7-Tetrahydroxy-flavyliumHMDB
3,4',5,7-TetrahydroxyflavyliumHMDB
3,5,7-Trihydroxy-2-(4-hydroxyphenyl)-1-benzopyryliumHMDB
PelargonidolHMDB
PelargonidineHMDB
Chemical FormulaC15H11ClO5
Average Molecular Weight306.698
Monoisotopic Molecular Weight306.029501169
IUPAC Name3,5,7-trihydroxy-2-(4-hydroxyphenyl)-1lambda4-chromen-1-ylium chloride
Traditional Name3,5,7-trihydroxy-2-(4-hydroxyphenyl)-1lambda4-chromen-1-ylium chloride
CAS Registry Number134-04-3
SMILES
[Cl-].OC1=CC=C(C=C1)C1=[O+]C2=CC(O)=CC(O)=C2C=C1O
InChI Identifier
InChI=1S/C15H10O5.ClH/c16-9-3-1-8(2-4-9)15-13(19)7-11-12(18)5-10(17)6-14(11)20-15;/h1-7H,(H3-,16,17,18,19);1H
InChI KeyYPVZJXMTXCOTJN-UHFFFAOYSA-N
Chemical Taxonomy
Description belongs to the class of organic compounds known as 7-hydroxyflavonoids. These are flavonoids that bear one hydroxyl group at the C-7 position of the flavonoid skeleton.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassFlavonoids
Sub ClassHydroxyflavonoids
Direct Parent7-hydroxyflavonoids
Alternative Parents
Substituents
  • 4'-hydroxyflavonoid
  • 5-hydroxyflavonoid
  • 7-hydroxyflavonoid
  • Anthocyanidin
  • Benzopyran
  • 1-benzopyran
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Monocyclic benzene moiety
  • Benzenoid
  • Heteroaromatic compound
  • Organoheterocyclic compound
  • Oxacycle
  • Organooxygen compound
  • Hydrochloride
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organic zwitterion
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
StatusExpected but not Quantified
Origin
  • Endogenous
BiofunctionNot Available
ApplicationNot Available
Cellular locations
  • Cell membrane
  • Membrane
Physical Properties
StateSolid
Experimental Properties
PropertyValueReference
Melting Point> 350 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.94ALOGPS
logP3.33ChemAxon
logS-4ALOGPS
pKa (Strongest Acidic)6.03ChemAxon
pKa (Strongest Basic)-5.6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area94.06 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity82.13 m³·mol⁻¹ChemAxon
Polarizability27.17 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Spectra
Spectra
Spectrum TypeDescriptionSplash Key
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positivesplash10-052f-0981000000-53916e999e3043b941f6View in MoNA
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (4 TMS) - 70eV, Positivesplash10-0076-3311940000-27f659d1235c6ca0641aView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-0a4i-0009000000-75ae7896b3bc877f752cView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-0a4i-0009000000-75ae7896b3bc877f752cView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-0a4i-0009000000-75ae7896b3bc877f752cView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-0a4i-0009000000-040a4a951c0bd5fb67b6View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-0a4i-0009000000-040a4a951c0bd5fb67b6View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-0a4i-0009000000-040a4a951c0bd5fb67b6View in MoNA
Biological Properties
Cellular Locations
  • Cell membrane
  • Membrane
Biospecimen LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
HMDB IDHMDB0125089
DrugBank IDNot Available
Phenol Explorer Compound ID18
FooDB IDFDB012426
KNApSAcK IDC00007232
Chemspider ID389676
KEGG Compound IDC05904
BioCyc IDPELARGONIDIN-CMPD
BiGG IDNot Available
Wikipedia LinkPelargonidin
METLIN ID3399
PubChem Compound67249
PDB IDNot Available
ChEBI ID28510
References
Synthesis ReferenceWillstatter, R.; Zechmeister, L. Syntheses of pelargonidin. Sitzb. kgl. preuss. Akad. (1914), 886-93. CAN 9:5222 AN 1915:5222
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available