Phenotype Details
Phene ID
3725
Name
Depigmentation associated with microphthalmia
Phene Name
N/A
OMIA ID
1931
Species ID
9913
Characterised
Yes
Characterised Year
2014
Linked Genes
SymbolGene IDChromosomeDescription
MITF40721922microphthalmia-associated transcription factor
Linked Variants
Variant IDPhenotypeGene IDDeleteriousChromosomeGenomicTranscriptProtein
678Depigmentation associated with microphthalmia407219122N/AN/AN/A
Linked Breeds
BreedBreed IDSpecies IDVBO Term
Holstein (black and white) (Cattle)399913http://purl.obolibrary.org/obo/VBO_0000237
Molecular Genetics

Having access to tissue from just a single affected calf and its normal parents, and having noted the calf's resemblance to disorders in humans (see OMIM links above) and various animal species (including horse {OMIA 000214-9796, OMIA 001688-9796}, cattle {OMIA 000214-9913, OMIA 001680-9913, OMIA 001931-9913}, and dog {OMIA 000214-9615}) due to mutations in the MITF gene, Wiedemar and Drögemüller (2014) sequenced "all exons of the MITF gene in the calf, mother and father . . . to look for possible de novo mutations". Although no potential causal variants were detected, the authors did notice that "there were three intronic and four exonic SNPs for which the father showed homozygosity for one allele, the mother for the other allele and, surprisingly, the calf was not heterozygous in these SNPs as expected but carried the maternal alleles only", implying deletion of the paternal chromosome in the calf. Having verified correct parentage via the ISAG bovine parentage microsatellite panel, the authors genotyped the calf and its parents with the Illumina BovineHD BeadChip (777 962 SNPs), which revealed that of the 855 SNPs exhibiting non-Mendelian inheritance, 307 were located within a 17.2 Mb region of chromosome BTA22 containing the MITF gene, and for each of these markers, the calf had inherited only the maternal allele. Subsequent analysis of all BTA22 SNPs enabled Wiedemar and Drögemüller (2014) to conclude that this disorder is due to a de novo deletion of a 19.1 Mb region of BTA22 from 28 835 247–47 983 179 which "contains 132 annotated genes and loci" including MITF. It remains an open question as to whether the disorder is due solely to the deletion of MITF or to the deletion of some other genes as well.

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