Phenotype Details
Phene ID
62
Name
Haplotype with homozygous deficiency HH1, APAF1-related
Phene Name
Haplotype HH1
OMIA ID
1
Species ID
9913
Characterised
Yes
Characterised Year
2012
Linked Variants
Variant IDPhenotypeGene IDDeleteriousChromosomeGenomicTranscriptProtein
286Abortion due to a nonsense mutation in APAF1 on haplotype HH117025753615g.62810245C>TXM_015471110.2:c.1735C>TXP_015326596.1:p.(Q579*)
Linked Breeds
BreedBreed IDSpecies IDVBO Term
Blanco Orejinegro, Colombia (Cattle)13409913http://purl.obolibrary.org/obo/VBO_0004602
Holstein Friesian (Cattle)739913http://purl.obolibrary.org/obo/VBO_0000239
Molecular Genetics

Adams et al. (2012) revealed the causal mutation of HH1 as "a nonsense mutation in APAF1 . . . , which is predicted to truncate approximately one-third of the encoded APAF1 protein". Because functional APAF1 peptide is required for embryo development, homozygosity for this allele results in natural spontaneous abortion, and, consequently, perceived reduced fertility in carrier bulls that happen to be mated to carrier cows. Adams et al. (2016) published the causal mutation as being "a nonsense mutation in APAF1 (apoptotic protease activating factor 1; APAF1 p.Q579X) within HH1 using whole-genome resequencing of Chief and 3 of his sons. This mutation is predicted to truncate 670 AA (53.7%) of the encoded APAF1 protein that contains a WD40 domain critical to protein–protein interactions."

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