Toggle navigation
BMDB
Browse
Metabolites
Biospecimens
Classes
Pathways
Proteins
Reactions
Search
ChemQuery Structure Search
Molecular Weight Search
Text Query
Sequence Search
Advanced Search
LC-MS Search
LC-MS/MS Search
GC-MS Search
NMR Search
Downloads
About
About the Bovine Metabolome Database
Citing the BMDB
Wishart Research Group
TMIC Wishart Node
Contact Us
metabolites
pathways
proteins
reactions
Search
Quantitative metabolomics services for biomarker discovery and validation.
Specializing in ready to use metabolomics kits.
Your source for quantitative metabolomics technologies and bioinformatics.
Showing structure for BMDB0000419 (3b,7a,12a-Trihydroxy-5b-cholanoic acid)
5283870 -OEChem-03232311583D 69 72 0 1 0 0 0 0 0999 V2000 0.6651 -1.5704 1.2282 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.6587 2.5410 0.6829 O 0 0 0 0 0 0 0 0 0 0 0 0 -6.3208 -0.2116 1.6501 O 0 0 0 0 0 0 0 0 0 0 0 0 6.4493 0.5985 2.7342 O 0 0 0 0 0 0 0 0 0 0 0 0 7.2424 0.8144 0.6174 O 0 0 0 0 0 0 0 0 0 0 0 0 1.0215 -0.4733 -0.9490 C 0 0 1 0 0 0 0 0 0 0 0 0 0.2642 0.8218 -0.5723 C 0 0 2 0 0 0 0 0 0 0 0 0 -1.2273 0.7769 -0.9401 C 0 0 1 0 0 0 0 0 0 0 0 0 -1.8982 -0.4249 -0.1933 C 0 0 1 0 0 0 0 0 0 0 0 0 -3.4369 -0.5323 -0.5272 C 0 0 2 0 0 0 0 0 0 0 0 0 2.4511 -0.0475 -0.5228 C 0 0 2 0 0 0 0 0 0 0 0 0 0.4065 -1.6553 -0.1727 C 0 0 2 0 0 0 0 0 0 0 0 0 -1.1161 -1.7557 -0.4049 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.1377 0.8233 -0.1814 C 0 0 2 0 0 0 0 0 0 0 0 0 1.1281 1.9320 -1.1691 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.9409 2.1106 -0.6451 C 0 0 1 0 0 0 0 0 0 0 0 0 2.5686 1.4082 -1.0302 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.4542 2.0268 -0.8627 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.1438 -1.6740 0.2610 C 0 0 0 0 0 0 0 0 0 0 0 0 0.9733 -0.7975 -2.4674 C 0 0 0 0 0 0 0 0 0 0 0 0 3.5921 -0.9350 -0.9991 C 0 0 1 0 0 0 0 0 0 0 0 0 -4.2841 1.0554 1.3416 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.6644 -0.8550 -2.0289 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.2498 -1.4251 1.7637 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.9593 -0.1096 2.0609 C 0 0 2 0 0 0 0 0 0 0 0 0 4.9444 -0.3575 -0.5333 C 0 0 0 0 0 0 0 0 0 0 0 0 3.3805 -2.3710 -0.5078 C 0 0 0 0 0 0 0 0 0 0 0 0 5.0474 -0.1757 0.9824 C 0 0 0 0 0 0 0 0 0 0 0 0 6.3578 0.4626 1.3852 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3291 0.9409 0.5205 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.3111 0.6156 -2.0193 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.8106 -0.2243 0.8817 H 0 0 0 0 0 0 0 0 0 0 0 0 2.4536 -0.0086 0.5732 H 0 0 0 0 0 0 0 0 0 0 0 0 0.8196 -2.6097 -0.5022 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.5106 -2.5129 0.2817 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.2894 -2.1282 -1.4191 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.1565 0.7920 -0.5924 H 0 0 0 0 0 0 0 0 0 0 0 0 0.9987 2.8800 -0.6372 H 0 0 0 0 0 0 0 0 0 0 0 0 0.8852 2.1087 -2.2229 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.5461 2.8898 -1.3069 H 0 0 0 0 0 0 0 0 0 0 0 0 3.0737 1.4712 -2.0009 H 0 0 0 0 0 0 0 0 0 0 0 0 3.1361 2.0232 -0.3233 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.6476 1.9774 -1.9413 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.9248 2.9527 -0.5084 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.6419 -2.6331 0.0926 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.1551 -1.8211 -0.1410 H 0 0 0 0 0 0 0 0 0 0 0 0 1.4846 -1.7390 -2.6917 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.0477 -0.9106 -2.8416 H 0 0 0 0 0 0 0 0 0 0 0 0 1.4467 -0.0226 -3.0781 H 0 0 0 0 0 0 0 0 0 0 0 0 3.6315 -0.9588 -2.0952 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.3200 1.2194 1.8231 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.8792 1.9640 1.4983 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.7343 -0.8470 -2.2697 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.1863 -0.1385 -2.7005 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.2909 -1.8509 -2.2882 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.8104 -2.2542 2.2121 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.2531 -1.4265 2.2182 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.9635 0.0732 3.1406 H 0 0 0 0 0 0 0 0 0 0 0 0 0.2762 -2.3556 1.6494 H 0 0 0 0 0 0 0 0 0 0 0 0 5.7522 -1.0202 -0.8712 H 0 0 0 0 0 0 0 0 0 0 0 0 5.1316 0.6015 -1.0323 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.4775 1.7772 1.2507 H 0 0 0 0 0 0 0 0 0 0 0 0 3.0514 -2.4200 0.5335 H 0 0 0 0 0 0 0 0 0 0 0 0 2.6933 -2.9233 -1.1506 H 0 0 0 0 0 0 0 0 0 0 0 0 4.3254 -2.9253 -0.5645 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.3654 -0.3195 0.6875 H 0 0 0 0 0 0 0 0 0 0 0 0 4.2694 0.4907 1.3628 H 0 0 0 0 0 0 0 0 0 0 0 0 4.9741 -1.1445 1.4868 H 0 0 0 0 0 0 0 0 0 0 0 0 7.2987 1.0089 3.0031 H 0 0 0 0 0 0 0 0 0 0 0 0 1 12 1 0 0 0 0 1 59 1 0 0 0 0 2 16 1 0 0 0 0 2 62 1 0 0 0 0 3 25 1 0 0 0 0 3 66 1 0 0 0 0 4 29 1 0 0 0 0 4 69 1 0 0 0 0 5 29 2 0 0 0 0 6 7 1 0 0 0 0 6 11 1 0 0 0 0 6 12 1 0 0 0 0 6 20 1 0 0 0 0 7 8 1 0 0 0 0 7 15 1 0 0 0 0 7 30 1 0 0 0 0 8 9 1 0 0 0 0 8 16 1 0 0 0 0 8 31 1 0 0 0 0 9 10 1 0 0 0 0 9 13 1 0 0 0 0 9 32 1 0 0 0 0 10 14 1 0 0 0 0 10 19 1 0 0 0 0 10 23 1 0 0 0 0 11 17 1 0 0 0 0 11 21 1 0 0 0 0 11 33 1 0 0 0 0 12 13 1 0 0 0 0 12 34 1 0 0 0 0 13 35 1 0 0 0 0 13 36 1 0 0 0 0 14 18 1 0 0 0 0 14 22 1 0 0 0 0 14 37 1 0 0 0 0 15 17 1 0 0 0 0 15 38 1 0 0 0 0 15 39 1 0 0 0 0 16 18 1 0 0 0 0 16 40 1 0 0 0 0 17 41 1 0 0 0 0 17 42 1 0 0 0 0 18 43 1 0 0 0 0 18 44 1 0 0 0 0 19 24 1 0 0 0 0 19 45 1 0 0 0 0 19 46 1 0 0 0 0 20 47 1 0 0 0 0 20 48 1 0 0 0 0 20 49 1 0 0 0 0 21 26 1 0 0 0 0 21 27 1 0 0 0 0 21 50 1 0 0 0 0 22 25 1 0 0 0 0 22 51 1 0 0 0 0 22 52 1 0 0 0 0 23 53 1 0 0 0 0 23 54 1 0 0 0 0 23 55 1 0 0 0 0 24 25 1 0 0 0 0 24 56 1 0 0 0 0 24 57 1 0 0 0 0 25 58 1 0 0 0 0 26 28 1 0 0 0 0 26 60 1 0 0 0 0 26 61 1 0 0 0 0 27 63 1 0 0 0 0 27 64 1 0 0 0 0 27 65 1 0 0 0 0 28 29 1 0 0 0 0 28 67 1 0 0 0 0 28 68 1 0 0 0 0 M END > <PUBCHEM_COMPOUND_CID> 5283870 > <PUBCHEM_CONFORMER_RMSD> 0.8 > <PUBCHEM_CONFORMER_DIVERSEORDER> 3 4 9 5 6 7 1 8 2 > <PUBCHEM_MMFF94_PARTIAL_CHARGES> 14 1 -0.68 12 0.28 16 0.28 2 -0.68 25 0.28 28 0.06 29 0.66 3 -0.68 4 -0.65 5 -0.57 59 0.4 62 0.4 66 0.4 69 0.5 > <PUBCHEM_EFFECTIVE_ROTOR_COUNT> 6.2 > <PUBCHEM_PHARMACOPHORE_FEATURES> 14 1 1 acceptor 1 1 donor 1 2 acceptor 1 2 donor 1 27 hydrophobe 1 3 acceptor 1 3 donor 1 4 acceptor 1 5 acceptor 3 4 5 29 anion 5 6 7 11 15 17 rings 6 10 14 19 22 24 25 rings 6 6 7 8 9 12 13 rings 6 8 9 10 14 16 18 rings > <PUBCHEM_HEAVY_ATOM_COUNT> 29 > <PUBCHEM_ATOM_DEF_STEREO_COUNT> 11 > <PUBCHEM_ATOM_UDEF_STEREO_COUNT> 0 > <PUBCHEM_BOND_DEF_STEREO_COUNT> 0 > <PUBCHEM_BOND_UDEF_STEREO_COUNT> 0 > <PUBCHEM_ISOTOPIC_ATOM_COUNT> 0 > <PUBCHEM_COMPONENT_COUNT> 1 > <PUBCHEM_CACTVS_TAUTO_COUNT> 1 > <PUBCHEM_CONFORMER_ID> 0050A01E00000003 > <PUBCHEM_MMFF94_ENERGY> 107.3441 > <PUBCHEM_FEATURE_SELFOVERLAP> 71.226 > <PUBCHEM_SHAPE_FINGERPRINT> 10 15 18335139813070829032 10319926 262 18188767220349173914 10906281 52 18262530285923542062 11796584 16 15936677186764373162 12035758 1 18410013256118160832 12403259 415 18130512933682225196 12422481 6 18341344296497352381 12596602 18 17530961385139989096 12633257 1 18337960085595873812 12892183 10 18339359661262039766 13140716 1 18191880126113004975 13224815 77 18041013851170182495 13540713 4 18121504557116029871 13782708 43 13839977812209354040 14251751 18 15936125270592419986 15209289 33 18040730159837606251 15788980 27 14562532860169621366 17349148 13 16878239596559103398 17980427 23 17988922314097675412 1813 80 16588310445563626574 19377110 9 18260271858627198076 20028762 73 18335993063779706203 20567600 247 14634863159219783584 21033648 29 18340767044250334641 21637258 2 14996280336345975192 22122407 14 16200153244233625482 22182313 1 18196386831154549671 23559900 14 18193282897419482126 23569914 152 11100894278704006818 23569914 2 15838134475048089072 2838139 119 15769770286992185288 350125 39 18261690232426443037 3886686 26 16524939891170340066 392239 28 18334860540810759936 5104073 3 18265333906992697274 > <PUBCHEM_SHAPE_MULTIPOLES> 567.46 14.07 2.2 2.02 14.57 0.4 0.53 -0.29 10.06 -1 -0.21 0.3 -0.2 0.88 > <PUBCHEM_SHAPE_SELFOVERLAP> 1191.01 > <PUBCHEM_SHAPE_VOLUME> 316.2 > <PUBCHEM_COORDINATE_TYPE> 2 5 10 $$$$
Download:
MOL
SDF
3D-SDF
PDB
SMILES
InChI
×
Structure for BMDB0000419 (3b,7a,12a-Trihydroxy-5b-cholanoic acid)