Phenotypes
Coat colour, albinism, oculocutaneous type IV — In Dexter cattle: dark dun / chocolate (CD) or light dun / cream (CL)
Rothammer et al. (2017): "comparisons of the sequence of [the candidate] haplotype [see Genetic mapping section] with sequence data from four Braunvieh sires and the Aurochs genome identified two possible candidate causal mutations at positions 39,829,806 bp (G/A; R45Q) [omia.variant:847] and 39,864,148 bp (C/T; T444I) [omia.variant:848] that were absent in 1682 animals from various bovine breeds included in the 1000 bull genomes project. Both...
Dwarfism, PRKG2-related
No summary available.
Goitre, familial
The causative mutation for this disorder was discovered via the candidate gene approach. Tassi et al. (1984) reported a 10-15-fold decrease in the concentration of TG mRNA in affected cattle; Ricketts et al. (1985) reported the use of S1 nuclease assays and electron microscopy to narrow down the location of the mutation to the junction of exon 9 and intron 9; and Ricketts et al. (1987) reported the use of cloning and sequencing of genomic DNA ...
Haplotype with homozygous deficiency HH5, TFB1M-related — Haplotype HH5
[FN thanks Ekkehard Schütz for feedback on an earlier version of the text on this page]
Hypomyelinogenesis, congenital — Charolais ataxia; Progressive ataxia of Charolais
By comparing whole-genome sequenced data (from 2 affecteds and one control) in the candidate region (see Mapping section), and filtering resultant candidate variants, Duchesne et al. (2018) narrowed the field down to "a single substitution in exon 5 of KIF1C (chr19:27041449 C/T). For easier comprehension and since KIF1C gene in cattle is on the reverse strand, the substitution will be referred as KIF1C G>A in order to match with the transcr...